So, here what I've noticed and based on my experience dealing with SharePoint migrations is worth to mention:
- Meeting workspaces are deprecated
SharePoint 2010 had meeting workspace templates which are not available in SharePoint 2013
From MSDN:
Description: When you create a site in SharePoint 2013, all five of the Meeting Workspace site templates are not available. This includes the Basic Meeting Workspace, Blank Meeting Workspace, Decision Meeting Workspace, Social Meeting Workspace, and Multipage Meeting Workspace.
Reason for change: SharePoint 2013 and Office 2013 provide other features that support meetings and collaboration. For example, you can use Lync to conduct live meetings, OneNote to take notes during meetings, and a SharePoint team site or My Site to store shared meeting notes.
Migration path: Existing sites that were created by using the Meeting Workspace site templates will continue to operate in SharePoint 2013. The Meeting Workspace site templates will be removed completely from the next major release of SharePoint and sites that were created by using the Meeting Workspace site templates will not be supported.
Enterprise templates.
There are way more templates in the Enterprise section:
Publishing templates.
An additional template is available in Publishing section:
- "Team site" configuration is changed:
Blank site and Document workspace site are not available for creation. But they are still available in the ONET.XML. The configuration of STS#1 is changed:
How it was in 2010:
<Configuration ID="0" Name="Default" MasterUrl="_catalogs/masterpage/v4.master">
<Lists>
<List FeatureId="00BFEA71-E717-4E80-AA17-D0C71B360101" Type="101" Title="$Resources:core,shareddocuments_Title;" Url="$Resources:core,shareddocuments_Folder;" QuickLaunchUrl="$Resources:core,shareddocuments_Folder;/Forms/AllItems.aspx" />
<List FeatureId="00BFEA71-6A49-43FA-B535-D15C05500108" Type="108" Title="$Resources:core,discussions_Title;" Url="$Resources:core,lists_Folder;/$Resources:core,discussions_Folder;" QuickLaunchUrl="$Resources:core,lists_Folder;/$Resources:core,discussions_Folder;/AllItems.aspx" EmailAlias="$Resources:core,discussions_EmailAlias;" />
<List FeatureId="00BFEA71-D1CE-42de-9C63-A44004CE0104" Type="104" Title="$Resources:core,announceList;" Url="$Resources:core,lists_Folder;/$Resources:core,announce_Folder;">
<Data>
<Rows>
<Row>
<Field Name="Title">$Resources:onetid11;</Field>
<Field Name="Body">$Resources:onetid12;</Field>
<Field Name="Expires"><ows:TodayISO/></Field>
</Row>
</Rows>
</Data>
</List>
<List FeatureId="00BFEA71-2062-426C-90BF-714C59600103" Type="103" Title="$Resources:core,linksList;" Url="$Resources:core,lists_Folder;/$Resources:core,links_Folder;" />
<List FeatureId="00BFEA71-EC85-4903-972D-EBE475780106" Type="106" Title="$Resources:core,calendarList;" Url="$Resources:core,lists_Folder;/$Resources:core,calendar_Folder;" QuickLaunchUrl="$Resources:core,lists_Folder;/$Resources:core,calendar_Folder;/Calendar.aspx" EmailAlias="$Resources:core,calendar_EmailAlias;" />
<List FeatureId="00BFEA71-A83E-497E-9BA0-7A5C597D0107" Type="107" Title="$Resources:core,taskList;" Url="$Resources:core,lists_Folder;/$Resources:core,tasks_Folder;" QuickLaunchUrl="$Resources:core,lists_Folder;/$Resources:core,tasks_Folder;/AllItems.aspx" />
</Lists>
<Modules>
<Module Name="Default" />
</Modules>
<SiteFeatures>
<!-- BasicWebParts Feature -->
<Feature ID="00BFEA71-1C5E-4A24-B310-BA51C3EB7A57" />
<!-- Three-state Workflow Feature -->
<Feature ID="FDE5D850-671E-4143-950A-87B473922DC7" />
</SiteFeatures>
<WebFeatures>
<!-- TeamCollab Feature -->
<Feature ID="00BFEA71-4EA5-48D4-A4AD-7EA5C011ABE5" />
<!-- MobilityRedirect -->
<Feature ID="F41CC668-37E5-4743-B4A8-74D1DB3FD8A4" />
<!-- WikiPageHomePage Feature -->
<Feature ID="00BFEA71-D8FE-4FEC-8DAD-01C19A6E4053" />
</WebFeatures>
</Configuration>
How it looks in 2013:
<Configuration ID="0" Name="Default" MasterUrl="_catalogs/masterpage/seattle.master">
<Lists>
<List FeatureId="00BFEA71-E717-4E80-AA17-D0C71B360101" Type="101" Title="$Resources:core,shareddocuments_Title_15;" Url="$Resources:core,shareddocuments_Folder;" OnQuickLaunch="TRUE" QuickLaunchHeading="TRUE" />
</Lists>
<Modules>
<Module Name="Default" />
</Modules>
<SiteFeatures>
<!-- BasicWebParts Feature -->
<Feature ID="00BFEA71-1C5E-4A24-B310-BA51C3EB7A57" />
<!-- Three-state Workflow Feature -->
<Feature ID="FDE5D850-671E-4143-950A-87B473922DC7" />
</SiteFeatures>
<WebFeatures>
<!-- TeamCollab Feature -->
<Feature ID="00BFEA71-4EA5-48D4-A4AD-7EA5C011ABE5" />
<!-- MobilityRedirect -->
<Feature ID="F41CC668-37E5-4743-B4A8-74D1DB3FD8A4" />
<!-- WikiPageHomePage Feature -->
<Feature ID="00BFEA71-D8FE-4FEC-8DAD-01C19A6E4053" />
<!-- SiteNotebook Feature -->
<Feature ID="F151BB39-7C3B-414F-BB36-6BF18872052F" />
<!-- Getting Started List instance -->
<Feature ID="4AEC7207-0D02-4f4f-AA07-B370199CD0C7" />
<!-- MDS -->
<Feature ID="87294C72-F260-42f3-A41B-981A2FFCE37A" />
</WebFeatures>
</Configuration>